Genomics Data

Genome resequencing data is available for 384 accessions of sorghum from the Bioenergy Association Panel (BAP). The available accessions from year 1 are listed here and from year 2 here. The raw and processed data is available using Globus.

Raw data (Bzip2 FASTQ):

/sites/hudson-alpha/raw_data/year1/
/sites/hudson-alpha/raw_data/year2/

Processed data (Gzipped VCF):

/sites/hudson-alpha/derived_data/year1/
/sites/hudson-alpha/derived_data/year2/

The output data are in variant call format (VCF), which contains single-nucleotide polymorphism (SNP) and insertion-deletion (indel) variation relative to the reference Sorghum bicolor v3.1 genome.

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